Here a list of the services and resouces hosted at GenOuest by our partners.
Hosted sites
AmyPDB
a database dedicated to amyloid precursor proteins
AnnotQTL
The AnnotQTL server is a tool designed to gather the functional annotation of genes from several institutional databases for a specific chromosomal region. This tool was initially designed to help the characterization of the genes in a QTL interval region
AphidBase
AphiBase: an aphid genomics database and query tools
ASP for Biology
ASP solvers offer highly efficient inference engines based on Boolean constraint solving technology and can solve hard combinatorial search problems.
AuReMe
AuReMe proposes a modular and adaptable workspace for reproducible reconstruction of genomic-scale metabolic models.
Autograph
AutoGRAPH: An interactive web server for automating and visualizing comparative genome maps
Cadbiom
CADBIOM is an open source modelling software.
CoBalt
CoBaltDB is a platform provinding easy access to the results of multiple localization tools and support for predicting protein subcellular localizations for 784 whole bacterial and archaeal proteomes.
Crispi
a CRISPR Interactive database
Cyanolyase
CyanoLyase is a manually curated sequence and amino acid motif database gathering all the different phycobilin lyases and related protein sequences
DGD
DGD: Duplicated Genes Database
DoG_CNV
Database of Genomic Copy Number Variants in the dog genome
Edystrophin
Edystrophin takes you from the GENE to the PROTEINS through structural investigation and visualization. It is a locus specific database for in-frame mutations and SNPs found in the DMD gene and the associated dystrophin variants
GAG
The Genomic Annotation Gathering tool is a database which aims to provide an enriched cross-references database to scientific community.
Germonline
GermOnline provides high-throughput expression data relevant for germline development and fertility across species
GO2Pub
GO2PUB creates an enriched PubMed query from the name, symbol and synonyms of genes annotated by one or several asked GO terms, for one or several species.
GPSY
GPSy: High-throughput profiling experiments based on for example microarrays or proteomics yield genes potentially important for a given biological process. While numerous solutions are available for selecting and clustering genes, fewer tools facilitate
Logol
Logol is a language used to describe some patterns in a DNA/RNA/Protein sequence
MapDeCoDe
Resource for performance comparison of the different mapping software
MetAmyl
Prediction of amyloid fragments
MIMAS
MIMAS: A Microarray Information Management and Analysis System (MIMAS) which is a platform dedicated to storage and analysis of microarray data
Minia
Minia is a short-read assembler based on a de Bruijn graph, capable of assembling a human genome on a desktop computer in a day
MIPDB
MIPDB: Relational database of Ma jor Intrinsic Protein (MIP) of Archaea, Bacteria and Eukaryota.
Orthocis
Orthocis is a tool dedicated to explore cis-regulatory sequences in eukaryotic genomes.
OxyGene
OxyGene: Comparative genomics platform of detoxification (oxidative stress) response genes.
PePSy
PepPSy is a user-friendly gene expression-based prioritization system
Phymyco-DB
Phymyco-DB: a database providing access to fungal DNA markers data for phylo- genies
Rapsodyn IS
Information system for the Rapsodyn project.
RASTA-Bacteria
RASTA-Bacteria: a scanner for toxin-antitoxins in bacteria
SORGOdb
SORGOdb is an exhaustive database of Superoxide Reductases (SOR) that proposes a new classification based on domain architecture
SRD Staphylococcal regulatory RNAs
Staphylococcal regulatory RNAs database
The ReproGenomics Viewer (RGV)
The ReproGenomics Viewer (RGV) is a comprehensive and coordinated effort to accelerate our understanding of the molecular basis of gametogenesis, reproduction and related disorders through the application of genome analysis technologies, including large-s
TOXsIgN
The TOXicogenomics sIgNature (TOXsIgN) repository provides a flexible and open design that facilitates online submission by the toxicology community, storage and retrieval of toxicogenomics signatures.